Index B | C | D | E | F | G | H | K | L | M | O | P | R | S | T B BrownianMotion (class in folie) BSplinesFunction (class in folie.functions) C check_dim() (folie.DrozdovDensity method) (folie.ElerianDensity method) (folie.EulerDensity method) (folie.ExactDensity method) (folie.KesslerDensity method) coefficients (folie.BrownianMotion property) (folie.functions.BSplinesFunction property) (folie.functions.Constant property) (folie.functions.FiniteElement property) (folie.functions.Fourier property) (folie.functions.KernelFunction property) (folie.functions.Linear property) (folie.functions.ModelOverlay property) (folie.functions.Polynomial property) (folie.functions.sklearnBSplines property) (folie.functions.sklearnTransformer property) (folie.functions.sklearnWrapper property) (folie.OrnsteinUhlenbeck property) (folie.Overdamped property) coefficients_drift (folie.BrownianMotion property) (folie.OrnsteinUhlenbeck property) (folie.Overdamped property) coefficients_drift_biased (folie.BrownianMotion property) (folie.OrnsteinUhlenbeck property) (folie.Overdamped property) Constant (class in folie.functions) copy() (folie.BrownianMotion method) (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) (folie.OrnsteinUhlenbeck method) (folie.Overdamped method) D dim (folie.BrownianMotion property) (folie.OrnsteinUhlenbeck property) (folie.Overdamped property) DrozdovDensity (class in folie) E e_step() (folie.ElerianDensity method) (folie.EulerDensity method) ELBOEstimator (class in folie) ElerianDensity (class in folie) EMEstimator (class in folie) EulerDensity (class in folie) exact_step() (folie.BrownianMotion method) ExactDensity (class in folie) F fetch_model() (folie.ELBOEstimator method) (folie.EMEstimator method) (folie.KramersMoyalEstimator method) (folie.LikelihoodEstimator method) FiniteElement (class in folie.functions) fit() (folie.ELBOEstimator method) (folie.EMEstimator method) (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) (folie.KramersMoyalEstimator method) (folie.LikelihoodEstimator method) fit_fetch() (folie.ELBOEstimator method) (folie.EMEstimator method) (folie.KramersMoyalEstimator method) (folie.LikelihoodEstimator method) fit_transform() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) Fourier (class in folie.functions) free_energy_profile_1d() (in module folie.analysis) G get_params() (folie.BrownianMotion method) (folie.ELBOEstimator method) (folie.EMEstimator method) (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) (folie.KramersMoyalEstimator method) (folie.LikelihoodEstimator method) (folie.OrnsteinUhlenbeck method) (folie.Overdamped method) grad_coeffs() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) H has_exact_density (folie.BrownianMotion property) (folie.OrnsteinUhlenbeck property) (folie.Overdamped property) has_model (folie.ELBOEstimator property) (folie.EMEstimator property) (folie.KramersMoyalEstimator property) (folie.LikelihoodEstimator property) hiddencorrection() (folie.ElerianDensity method) (folie.EulerDensity method) K KernelFunction (class in folie.functions) KesslerDensity (class in folie) KramersMoyalEstimator (class in folie) L LikelihoodEstimator (class in folie) Linear (class in folie.functions) M mfpt_1d() (in module folie.analysis) model (folie.DrozdovDensity property) (folie.ELBOEstimator property) (folie.ElerianDensity property) (folie.EMEstimator property) (folie.EulerDensity property) (folie.ExactDensity property) (folie.KesslerDensity property) (folie.KramersMoyalEstimator property) (folie.LikelihoodEstimator property) ModelOverlay (class in folie.functions) O OrnsteinUhlenbeck (class in folie) Overdamped (class in folie) OverdampedSplines1D() (in module folie) P Polynomial (class in folie.functions) preprocess_traj() (folie.DrozdovDensity method) (folie.ElerianDensity method) (folie.EulerDensity method) (folie.ExactDensity method) (folie.KesslerDensity method) (folie.KramersMoyalEstimator method) R resize() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) S set_output() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) set_params() (folie.BrownianMotion method) (folie.ELBOEstimator method) (folie.EMEstimator method) (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) (folie.KramersMoyalEstimator method) (folie.LikelihoodEstimator method) (folie.OrnsteinUhlenbeck method) (folie.Overdamped method) sklearnBSplines (class in folie.functions) sklearnTransformer (class in folie.functions) sklearnWrapper (class in folie.functions) T Trajectories() (in module folie) transform() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) transform_d2x() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method) transform_dcoeffs() (folie.functions.ModelOverlay method) transform_dx() (folie.functions.BSplinesFunction method) (folie.functions.Constant method) (folie.functions.FiniteElement method) (folie.functions.Fourier method) (folie.functions.KernelFunction method) (folie.functions.Linear method) (folie.functions.ModelOverlay method) (folie.functions.Polynomial method) (folie.functions.sklearnBSplines method) (folie.functions.sklearnTransformer method) (folie.functions.sklearnWrapper method)